NAU2461, NAU2461 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2461
Genbank IDDT052563
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052563.1
Source TypeEST
Repeat MotifAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2461_F: TATTTAGGCAAGTAACCACT
Primer 2NAU2461_R: CCCCACTACTTTCTTCATGC
Product Length206
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052563
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:3700205..3700409 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:3466258..3466468 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:62432182..62432388 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:3456538..3456752 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:6643609..6643813 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:3699018..3699222 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:3610470..3610674 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:3639001..3639205 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:3580772..3580976 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17829supercontigscaffold17829:86693..86903 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:3520086..3520296 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017633.1chromosomeCM017633.1:3502329..3502538 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:3519069..3519280 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:3613637..3613841 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:59915207..59915414 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:3884297..3884520 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:3357837..3358046 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:2720201..2720438 -Gossypium gossypioides (D6) genome ISU_v1n/a
F11chromosomeF11:3327202..3327415 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052563.1DT052563.1Gossypium hirsutumsequence_feature


Sequence
>NAU2461 ID=NAU2461; Name=NAU2461; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
TATTTAGGCAAGTAACCACTAATATATATATATTTTAATTACAGTACATT
GATGGTACTGATATATAAAAAACTTCAAGAGTTGTATTGAGAAAAAAAAA
CTAACATTCGATTACATAATAGTGCTGGATCACATAACTCTGGTTTTTTT
TTTTGGATGTACAATTATGCATAGCTCAGATCTGCGGCATGAAGAAAGTA
GTGGGG