NAU2459, NAU2459 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2459
Genbank IDDT052536
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052536.1
Source TypeEST
Repeat MotifATC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2459_F: CCCATAAGCCATCATACACA
Primer 2NAU2459_R: GAAAGAAACAAATGGGGAAA
Product Length196
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052536
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:236849..237044 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:497980..498174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:511287..511482 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:416658..416854 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:489657..489853 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:59032662..59032857 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:145445261..145445453 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold6518.1supercontigscaffold6518.1:9323..9518 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4086_D06supercontigscaffold4086_D06:38757..38952 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold1251_A06supercontigscaffold1251_A06:20105..20299 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:373962..374157 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:492558..492752 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:351454..351649 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:475621..475815 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:354449..354644 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:484822..485016 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:495122..495317 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:489233..489427 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9766supercontigscaffold9766:92393..92588 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9766supercontigscaffold9766:90485..90680 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:386199..386394 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:511602..511797 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:513955..514149 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:518643..518839 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:508427..508622 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:503946..504141 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:369740..369935 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:494549..494743 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:527605..527800 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:528751..528948 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:416514..416709 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:97233030..97233212 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:456210..456404 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:450291..450489 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F06chromosomeF06:130203..130397 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052536.1DT052536.1Gossypium hirsutumsequence_feature


Sequence
>NAU2459 ID=NAU2459; Name=NAU2459; organism=Gossypium hirsutum; type=genetic_marker; length=196bp
CCCATAAGCCATCATACACAGCTGTGAACAGTGATCATCATCATCTTTCA
AAAACCCTCTCTGCTACTCAGAGAACAGCCATTGACGACTAAATTAAAAA
GGAAAAAGAAAAAGAAAAGAAATTAAAAAAAAATCATACACACACAAACT
TTCTGATATAGGGTAGTGCTTGGTTTTTTCCCCATTTGTTTCTTTC