NAU2452, NAU2452 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2452
Genbank IDDT052423
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052423.1
Source TypeEST
Repeat MotifAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2452_F: GGGAAACCGAGCTACTTAAA
Primer 2NAU2452_R: ACATTTCGCTGTAGCGTGTA
Product Length118
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052423
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:101355437..101355553 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:1460383..1460497 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A12chromosomeA12:86101440..86101556 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:106036378..106036494 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:106069786..106069902 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:104179691..104179807 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:101108163..101108279 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold24745supercontigscaffold24745:1542..1656 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:100577022..100577136 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:100113711..100113825 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:101315775..101315891 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:105203572..105203686 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:100456826..100456940 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:107772815..107772931 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:108776146..108776260 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:115774219..115774333 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:84455599..84455711 -Gossypium anomalum (B1) genome NSF_v1n/a
F12chromosomeF12:89944671..89944783 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:172768648..172768780 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeNAU2452:17..550 .
Chr08:55732661..55733272 +		n/a
Chr8chromosomeNAU2452:17..550 .
Chr8:3009764..3010375 -		n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052423.1DT052423.1Gossypium hirsutumsequence_feature


Sequence
>NAU2452 ID=NAU2452; Name=NAU2452; organism=Gossypium hirsutum; type=genetic_marker; length=118bp
GGGAAACCGAGCTACTTAAAACATATTACTTCGAGTTCAAAGTAAACAGG
ATATATATATATCCATTGCACCTAACTAGAAATCTAGGCTTTTAAAACTA
CACGCTACAGCGAAATGT