NAU2450, NAU2450 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2450
Genbank IDDT052355
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052355.1
Source TypeEST
Repeat MotifTA(8); TCG(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2450_F: CCATACCATACCATAGCTTTATG
Primer 2NAU2450_R: TTCCTTTCCATCTGGCTTAC
Product Length190
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052355
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:53672321..53672506 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:80831811..80831999 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:79924094..79924284 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:51539016..51539202 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:78348785..78348969 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:2569244..2569428 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2377001..2377185 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:3245348..3245536 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:49802826..49803008 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:124465947..124466138 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr12chromosomeAt_chr12:51765414..51765604 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:1640183..1640368 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:48646803..48646988 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:60676403..60676593 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:53491776..53491960 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:82373330..82373518 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54198622..54198807 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:85090422..85090612 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:53329068..53329253 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:82623590..82623778 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:51354031..51354216 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:78292989..78293179 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9797supercontigscaffold9797:334658..334842 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold32010supercontigscaffold32010:50142..50328 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:49596838..49597024 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:78824882..78825066 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:54685925..54686111 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:79241086..79241270 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:51667333..51667517 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:80853149..80853335 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:54479560..54479742 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:89370417..89370605 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:51894025..51894211 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:79360681..79360865 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:55266575..55266760 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:86383181..86383371 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:106269437..106269625 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:108040772..108040960 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:2524589..2524775 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:3138768..3138980 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:51559350..51559542 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:21980058..21980250 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:51502550..51502751 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:25954313..25954501 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12_6285101chromosomeChr12_6285101:3452..3640 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:102605873..102606062 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:88673341..88673529 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:174958176..174958365 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052355.1DT052355.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch22_Dt.04N/A0NAU2450View
Sequence
>NAU2450 ID=NAU2450; Name=NAU2450; organism=Gossypium hirsutum; type=genetic_marker; length=190bp
CCATACCATACCATAGCTTTATGATTTTCACATATTTTATTTCATACTAC
TGCTTATACAACTATATATATATATATAAACTGAGATTAAAAATCCCATT
AAAATTGTGGCATTATAGAAAATTAATGCTGAAACGTGTTATCAGCAGAG
GCCATGATAGGCTGATTCAAGTAAGCCAGATGGAAAGGAA