NAU2442, NAU2442 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2442
Genbank IDDT052246
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052246.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2442_F: TGGGATCTAATTAACCGTGA
Primer 2NAU2442_R: CGAAACCTGTAGTGACGTTG
Product Length124
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052246
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:22401250..22401372 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:22607557..22607675 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:33562345..33562479 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:70835135..70835257 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:21042398..21042520 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:22949029..22949150 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:22506596..22506718 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:22551118..22551238 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:23404069..23404191 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:22803972..22804090 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8838supercontigscaffold8838:134603..134721 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:22883338..22883456 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:22725421..22725539 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:22794490..22794610 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:23492757..23492877 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:23012693..23012815 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:23570487..23570609 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:98011065..98011194 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:91436785..91436921 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:28987289..28987426 -Gossypium anomalum (B1) genome NSF_v1n/a
F10chromosomeF10:69178003..69178123 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052246.1DT052246.1Gossypium hirsutumsequence_feature


Sequence
>NAU2442 ID=NAU2442; Name=NAU2442; organism=Gossypium hirsutum; type=genetic_marker; length=124bp
TGGGATCTAATTAACCGTGACATGAAACAATACATACATACACATATATA
TATATATAATAAATAAGGCAAAAAAAGAAATGAAAAGTTAAAATTTCATG
GCGTCAACGTCACTACAGGTTTCG