NAU2440, NAU2440 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2440
Genbank IDDT052208
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052208.1
Source TypeEST
Repeat MotifTACA(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2440_F: TCTATCCTGGGATGGAACAT
Primer 2NAU2440_R: CAGAATATCTGCAGCAGTGG
Product Length194
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052208
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Dt02chromosomeDt02:28820132..28820303 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12291supercontigscaffold12291:430507..430678 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052208.1DT052208.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch03_At.03N/A66nau2440View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A35nau2440View
3TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A65.6NAU2440-315View
4TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A63.23NAU2440-315View
5TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A61.4NAU2440-315View
Sequence
>NAU2440 ID=NAU2440; Name=NAU2440; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
TCTATCCTGGGATGGAACATACATACGTACATACATACATACATACATAA
ATACATCACATACCTACCATACGTCACGGTCATCATATACCAGGCACAGC
AAACACGCATCACCCAACCACTGCACACACACAGCTCATCCCATAACATC
CAAGTGGCCATCATGGCACTCCATCCACTGCTGCAGATATTCTG