NAU2436, NAU2436 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2436
Genbank IDDT052093
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT052093.1
Source TypeEST
Repeat MotifAT(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2436_F: AACACTCATCATTGGGAGCTA
Primer 2NAU2436_R: CTCAATCTCCTACCGATGCT
Product Length247
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT052093
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:2959006..2959252 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:2782999..2783245 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:59767643..59767897 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:61356618..61356872 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:3770498..3770738 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3641.1supercontigscaffold3641.1:7041..7287 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:2671731..2671977 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:3171702..3171948 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:2856349..2856595 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:2960148..2960394 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:3017160..3017406 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold264supercontigscaffold264:220719..220965 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15956supercontigscaffold15956:31404..31650 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:2812763..2813009 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:2860692..2860938 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:2847044..2847290 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:2920629..2920877 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:2865588..2865834 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:2961709..2961955 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2620003..2620259 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:98217683..98217923 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:2609112..2609360 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:2846805..2847067 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:2763889..2764129 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:110531801..110532041 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeChr10:166396236..166396476 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT052093.1DT052093.1Gossypium hirsutumsequence_feature


Sequence
>NAU2436 ID=NAU2436; Name=NAU2436; organism=Gossypium hirsutum; type=genetic_marker; length=247bp
AACACTCATCATTGGGAGCTACATATAAAAGTGCATATATATATATATTG
CTGCCACTTCCCTTAGAACAATAACACTTATGATTGGTAAGCTGTTACAC
AATTCAAAACGACACAAATATAGAAAGAATTCTACAACGATTCAATTAAT
TATCTATAAATNCCCATCAAAAACCTCGTCGACTTTCAGTTTCAGAGCTG
AGCAAGACGGCGGATATCAATGGGGTAAGCATCGGTAGGAGATTGAG