NAU2417, NAU2417 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2417
Genbank IDDT051627
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051627.1
Source TypeEST
Repeat MotifTA(8)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2417_F: TCTGTGACACCCTTTCTTCA
Primer 2NAU2417_R: TCCAACCCTGAGAAATCCTA
Product Length192
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051627
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:47529978..47530167 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:88453291..88453482 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:77313667..77313858 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018220.1chromosomeCM018220.1:42800509..42800698 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_06chromosomeKI_06:57006303..57006492 +Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:85539606..85539799 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:19696219..19696408 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:46895967..46896158 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:44462326..44462515 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:43389472..43389663 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold207329supercontigscaffold207329:43..234 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:43800116..43800305 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:82611247..82611438 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:46197556..46197745 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:85747876..85748067 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:45684062..45684251 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:84273457..84273648 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:45677012..45677201 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:81761338..81761529 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D06chromosomeD06:42723616..42723805 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4195supercontigscaffold4195:303938..304129 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4195supercontigscaffold4195:289766..289957 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2316supercontigscaffold2316:414203..414394 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2316supercontigscaffold2316:400222..400413 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2316supercontigscaffold2316:415820..416009 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:42970901..42971090 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:72828114..72828305 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:79222385..79222576 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D06chromosomeD06:43346573..43346762 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:82174341..82174530 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017628.1chromosomeCM017628.1:43600542..43600731 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:44619312..44619501 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:85091613..85091804 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:80585531..80585722 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017706.1chromosomeCM017706.1:43394935..43395124 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:86148301..86148492 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D06chromosomeD06:46081248..46081437 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:85494885..85495076 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:87227585..87227778 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:41013668..41013855 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:30700700..30700889 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:43338623..43338812 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:32832601..32832790 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:30214635..30214824 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:44648083..44648272 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:24067448..24067637 -Gossypium gossypioides (D6) genome ISU_v1n/a
E06chromosomeE06:36111593..36111784 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:70257200..70257391 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:84884633..84884822 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr10chromosomeNAU2417:2..547 .
Chr10:42719786..42720327 -		n/a
Chr10chromosomeNAU2417:2..547 .
Chr10:27484296..27484837 -		n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051627.1DT051627.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A69.2NAU2417View
Sequence
>NAU2417 ID=NAU2417; Name=NAU2417; organism=Gossypium hirsutum; type=genetic_marker; length=192bp
TCTGTGACACCCTTTCTTCACTTGAATACCTCATTTTCAGACTTATGACT
AAAACAGACCTACATACATATTTTCAACTTCTTTATGTCTATATATATAT
ATATACACACACAGGATGTATGCTACGCGAACGTCCAAAGAGAGCTTCAA
AGTTTTTAATTTCCCATGAAAGTAGGATTTCTCAGGGTTGGA