NAU2409, NAU2409 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2409
Genbank IDDT051368
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051368.1
Source TypeEST
Repeat MotifTCA(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2409_F: AAAACAGTGATACATGGAGAGG
Primer 2NAU2409_R: GTCCATTTGTTGGAGCACTT
Product Length234
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051368
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:92057119..92057352 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:101292038..101292271 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:86893042..86893337 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr2chromosomeDt_chr2:12979025..12979320 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:65471183..65471416 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:88191323..88191556 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:105694256..105694489 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:106397858..106398091 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:103920249..103920482 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:100801270..100801503 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2143supercontigscaffold2143:92964..93197 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:103793396..103793629 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:103871618..103871851 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:102413980..102414213 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:109729654..109729887 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:100037980..100038213 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:107392382..107392615 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:110607611..110607907 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:12509632..12509927 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:86552843..86553145 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:52067405..52067695 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:50255256..50255556 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051368.1DT051368.1Gossypium hirsutumsequence_feature


Sequence
>NAU2409 ID=NAU2409; Name=NAU2409; organism=Gossypium hirsutum; type=genetic_marker; length=234bp
AAAACAGTGATACATGGAGAGGGTCATCATCATCATTCATAATAATAATC
TTCTCATACACACAAACGAACAAATGGAGAAAATAGAAGAAGAGTGAAGT
GGAGACAAAGCTATTTGGGTTGATTTTTTTTTAGTTGGTGGGGTTGCTGC
GGAAGGATCCCAAAGCTTTGATAGCTGCTGCTCTAAGGATGTACTGATGA
TATATAGCTGCTGCAAGTGCTCCAACAAATGGAC