NAU2407, NAU2407 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2407
Genbank IDDT051341
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051341.1
Source TypeEST
Repeat MotifGCA(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2407_F: GTTGAGCTCCAAGGAACTGT
Primer 2NAU2407_R: GAGCTGTTAGCTTCCTCAGC
Product Length240
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051341
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:115656316..115656565 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:125877423..125877660 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1521.1supercontigscaffold1521.1:5377..5614 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1928_A08supercontigscaffold1928_A08:66773..67010 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold923supercontigScaffold923:23936..24173 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:121754088..121754325 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:121980209..121980446 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:117711858..117712095 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3262supercontigscaffold3262:284432..284667 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7987supercontigscaffold7987:315895..316144 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:116312502..116312751 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:117303948..117304197 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017643.1chromosomeCM017643.1:125623731..125623968 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:116564904..116565147 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr08chromosomeChr08:128348246..128348483 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_08chromosomeB_08:100997924..100998161 -Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:118520528..118520765 -Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051341.1DT051341.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A19.57NAU2407View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch08_At.08N/A13.34NAU2407View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch24_Dt.08N/A12.87NAU2407View
4AD-genome wide Reference Map (2009)AD_ch08_At.08N/A29NAU2407View
5Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A34.09NAU2407View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch24_Dt.08N/A120.4NAU2407View
7Hai-7124 x Junmian-1, F2 (2008) partAD_ch08_At.08N/A0NAU2407aView
8Hai-7124 x Junmian-1, BC1 (2008) partAD_ch08_At.08N/A10NAU2407aView
9TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A25.91NAU2407-400View
10TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A102.5NAU2407-400View
11TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A106.6NAU2407-400View
Sequence
>NAU2407 ID=NAU2407; Name=NAU2407; organism=Gossypium hirsutum; type=genetic_marker; length=240bp
GTTGAGCTCCAAGGAACTGTCCCAAGGGCAGGAGAAACCGGGGTAACTTT
AGAAATCCCAGTGGGTCGAGTCTCGGATCGAAGAGCAGCTGGTTTTTTAG
TCTGGGGTTTTGAAGTGGTCGGCTTTTTCCGAGTTTTCTGAGCCACTTTT
GGGAGAAGCTGATTTCGCAGCAGCAGCAGCAGCATAAAACTTGGCTGCTG
TCAACGGCACCGCCGCCGTTGCTGAGGAAGCTAACAGCTC