NAU2405, NAU2405 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2405
Genbank IDDT051273
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051273.1
Source TypeEST
Repeat MotifACAA(4); ATATG(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2405_F: TAAAGAATGTCTCCGCATGT
Primer 2NAU2405_R: GGGACTCTGATTTGTTCAGG
Product Length138
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051273
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:3366236..3366373 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:3762823..3762968 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:3097997..3098137 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:3718233..3718380 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:2992777..2992912 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3659543..3659689 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:57519255..57519392 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:66185699..66185836 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:50566923..50567068 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold122216supercontigscaffold122216:92..229 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:3206105..3206242 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:3270524..3270669 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:3340740..3340877 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:3771624..3771768 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:3137157..3137294 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:3651979..3652124 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:3251117..3251254 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:3745419..3745564 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:3111439..3111576 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:4150588..4150732 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:1832558..1832705 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10000supercontigscaffold10000:260777..260917 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10000supercontigscaffold10000:266897..267037 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17586supercontigscaffold17586:42723..42870 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:3246860..3247000 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:3407639..3407786 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:3398128..3398268 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:3889151..3889298 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:3222933..3223070 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:3726708..3726857 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:3389373..3389510 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:3815436..3815582 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:3214127..3214264 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:3687774..3687923 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:3275595..3275732 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:3852852..3852997 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:3975749..3975897 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:3516232..3516380 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:2998152..2998287 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:3110614..3110751 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:2930662..2930803 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:3282235..3282372 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:3190805..3190942 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E05chromosomeE05:3999191..3999328 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:3153266..3153406 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:194992085..194992220 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051273.1DT051273.1Gossypium hirsutumsequence_feature


Sequence
>NAU2405 ID=NAU2405; Name=NAU2405; organism=Gossypium hirsutum; type=genetic_marker; length=138bp
TAAAGAATGTCTCCGCATGTACNTTGTTCCTTCATAGGTCTGATCCGATA
CACCCCCCCAAACCCTGAAAGACAAACAAACAAACAAGAAAAACAAATTC
CTCTCGGGAATGTTTTACCCTGAACAAATCAGAGTCCC