NAU2400, NAU2400 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2400
Genbank IDDT051135
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT051135.1
Source TypeEST
Repeat MotifATA(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2400_F: TGTCCAAGGAGACATTCAAA
Primer 2NAU2400_R: TCCATGGGCTATTGAAGATT
Product Length113
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT051135
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:17904536..17904648 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:17227432..17227544 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:16293944..16294056 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:37426609..37426783 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:53591364..53591476 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:17328809..17328921 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:17729342..17729454 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:17001016..17001128 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:17700704..17700816 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:17253488..17253600 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold20841supercontigscaffold20841:36067..36179 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:17669089..17669201 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:17281231..17281343 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:17673749..17673861 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:17624010..17624119 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:17910360..17910472 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:36620098..36620210 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:17324349..17324461 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:14714510..14714768 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:13725993..13726167 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:17198143..17198318 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01_6044322chromosomeChr01_6044322:4846..5019 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:13475523..13475697 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeNAU2400:1..362 .
Chr01:16784116..16784475 +		n/a
Chr1chromosomeNAU2400:1..362 .
Chr1:20131697..20132056 -		n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT051135.1DT051135.1Gossypium hirsutumsequence_feature


Sequence
>NAU2400 ID=NAU2400; Name=NAU2400; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
TGTCCAAGGAGACATTCAAATCAAATTAAATATAATAATAATAAGAATAA
TGATTCACCAAAAAAAACAAGAAAACTTGCACGCACAAATCACAATCTTC
AATAGCCCATGGA