NAU2394, NAU2394 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2394
Genbank IDDT050989
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT050989.1
Source TypeEST
Repeat MotifCAT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2394_F: GAGTACAGGGACCCTTGAGA
Primer 2NAU2394_R: CTTCAGAAGCACACGATCAC
Product Length150
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050989
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:59732324..59732473 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:58718233..58718382 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:53697653..53697801 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:5968990..5969139 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:5583606..5583752 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:3899499..3899648 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:57420905..57421054 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:58659488..58659637 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:59433139..59433288 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:59339249..59339398 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
scaffold10447supercontigscaffold10447:180376..180525 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:60060079..60060228 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:61554899..61555048 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:58376231..58376380 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:60893480..60893629 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:59635996..59636145 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:61744253..61744402 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:53752013..53752162 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:7277682..7277829 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:53864954..53865104 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:50057796..50057945 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:57994290..57994441 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:48312634..48312783 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:40551150..40551299 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:50445899..50446048 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:98497017..98497164 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:72058861..72059008 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:15362787..15362934 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT050989.1DT050989.1Gossypium hirsutumsequence_feature


Sequence
>NAU2394 ID=NAU2394; Name=NAU2394; organism=Gossypium hirsutum; type=genetic_marker; length=150bp
GAGTACAGGGACCCTTGAGATATTTTTTAAAAAACCTACATATGAGTTAG
TGTGGGAGATAAATTAACGGCTCTGATCTCTGCTCAACCTACAGATTCCT
GTGATTGTGGCTGATGCATCATCATCATTGGTGATCGTGTGCTTCTGAAG