NAU2379, NAU2379 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2379
Genbank IDDT050673
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT050673.1
Source TypeEST
Repeat MotifAGG(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2379_F: ACAATGGAAACACCGAAAAT
Primer 2NAU2379_R: AGTTGAGTTGGGTCTGGTGT
Product Length176
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050673
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:67819258..67819432 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:64771366..64771540 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:245045..245219 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:193213..193387 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:206054..206230 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold613.1supercontigscaffold613.1:728776..728950 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:63225546..63225720 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:67532966..67533140 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:66647147..66647321 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:63949373..63949547 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold14466supercontigscaffold14466:124016..124187 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11534supercontigscaffold11534:76689..76863 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:65413390..65413564 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:66536799..66536973 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017658.1chromosomeCM017658.1:67451552..67451726 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:65613499..65613673 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:67831280..67831454 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:61690984..61691158 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr11chromosomechr11:52645500..52645923 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:43588531..43588705 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:65508477..65508651 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11_5526786chromosomeChr11_5526786:4791..4965 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:35907600..35907774 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:48642335..48642509 +Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:94665383..94665555 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:3061056..3061231 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT050673.1DT050673.1Gossypium hirsutumsequence_feature


Sequence
>NAU2379 ID=NAU2379; Name=NAU2379; organism=Gossypium hirsutum; type=genetic_marker; length=176bp
ACAATGGAAACACCGAAAATGAGAAGGAGGAGGAGGAACTCTTCTCATGC
TGGGACCCCACACACTTCACTAAATCCAATTGCATTGGAAAACAACACTC
ACAACACAACAACAATAATAAGTTACCAAATTGACAGTTCTGACACAATA
ATTTTAACACCAGACCCAACTCAACT