NAU2375, NAU2375 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2375
Genbank IDDT050622
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT050622.1
Source TypeEST
Repeat MotifAAACA(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2375_F: ACCCATGATACATTACATCT
Primer 2NAU2375_R: CCAATGGTATTTTGCTGTTG
Product Length177
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050622
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:56461399..56461575 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:54448104..54448280 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:18448971..18449131 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:79523062..79523238 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:77002588..77002764 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:49797858..49798034 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:29745738..29745871 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:59032010..59032186 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:56794176..56794352 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:57291333..57291509 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:56168648..56168824 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:54015620..54015796 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4748supercontigscaffold4748:264172..264348 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold46358supercontigscaffold46358:1648..1781 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:29281384..29281517 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:54486824..54487000 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:54607996..54608172 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:57410184..57410360 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:60013630..60013812 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:55086388..55086564 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:58753548..58753724 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:43612586..43612768 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:42768414..42768590 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:37865481..37865658 +Gossypium anomalum (B1) genome NSF_v1n/a
E11chromosomeE11:43571390..43571554 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT050622.1DT050622.1Gossypium hirsutumsequence_feature


Sequence
>NAU2375 ID=NAU2375; Name=NAU2375; organism=Gossypium hirsutum; type=genetic_marker; length=177bp
ACCCATGATACATTACATCTATCAATGATACATAAGTATTTGATTAGTTG
ATATATCTACAAGGGATTATATTTAAATCATTTAAACAAAAACAAAAACA
AAAACAAAAACAAAACAAAAAGAAGTAACGTTGTAAACGGAGTACCTTCA
TCAAATTCAACAGCAAAATACCATTGG