NAU2362, NAU2362 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2362
Genbank IDDT050341
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT050341.1
Source TypeEST
Repeat MotifATT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2362_F: CCACATTCAATATTCCTATC
Primer 2NAU2362_R: ATAAAGGGACTTGCCAGGTA
Product Length191
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050341
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:64228460..64228650 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:59921252..59921442 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:58336073..58336260 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:60296257..60296442 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:36707083..36707273 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:60038926..60039116 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:62819467..62819657 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:107763900..107764069 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:63946936..63947126 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:63414886..63415076 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:59662779..59662969 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold48407supercontigscaffold48407:1167..1336 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold29254supercontigscaffold29254:56039..56229 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:59801495..59801685 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:108729045..108729214 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:60756331..60756521 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:60480277..60480467 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:63948705..63948895 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:60283981..60284171 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:64580543..64580733 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:58313733..58313920 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr13chromosomechr13:44819937..44820122 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:43635448..43635633 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:62620114..62620322 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:42455709..42456383 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:32734162..32734335 +Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT050341.1DT050341.1Gossypium hirsutumsequence_feature


Sequence
>NAU2362 ID=NAU2362; Name=NAU2362; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
CCACATTCAATATTCCTATCAAGAATCGAATTATTTTGACAAAGTCTATT
TCAAGTACAAGTCATTTTCATTATTATTATTGAAATCATTTCGGGCTGTG
ATTCGATCGATCGGATCACTAGGACATATCAATTCCAAGTCTAGAACGGC
TAACTCAAATATGCGTGAAAGTACCTGGCAAGTCCCTTTAT