NAU2355, NAU2355 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2355
Genbank IDDT050186
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT050186.1
Source TypeEST
Repeat MotifTCA(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2355_F: ACAAACAAAACGCCTTCTTC
Primer 2NAU2355_R: AACACAAAAACGGTTCCAGT
Product Length249
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT050186
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:9195626..9195874 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:9240925..9241173 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:7551899..7552147 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:52972020..52972264 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:135318556..135318814 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr10chromosomeAt_chr10:68735507..68735755 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:7934080..7934328 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:9415362..9415610 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:8937830..8938078 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:9328635..9328883 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:9278336..9278584 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12679supercontigscaffold12679:36491..36739 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:8986147..8986395 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:9101948..9102196 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:9355723..9355971 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:9204507..9204755 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:9408165..9408413 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:9389118..9389366 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:9179885..9180133 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:9379670..9379918 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr10chromosomechr10:6462154..6462402 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:6020401..6020645 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10_3407398chromosomeChr10_3407398:5854..6103 -Gossypium gossypioides (D6) genome ISU_v1n/a
F06chromosomeF06:7866370..7866623 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT050186.1DT050186.1Gossypium hirsutumsequence_feature


Sequence
>NAU2355 ID=NAU2355; Name=NAU2355; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
ACAAACAAAACGCCTTCTTCCATGGAACAAAAGAAAGTGACAATACAGTT
CTTAACTCTTTTCTAGATTGACCATTATCATAGTCATCATCATCATTGAT
TTCATTGTCAACCCTTTACAAGGGAAAATTTTCGCTATAGATTCAACCTT
TAAGAGGATATGTCAAAATGTGCTACACACTAAAACTATACTTACGAAAA
AAAAAGGAGATTTGGAAGAGAACCGGCAGACTGGAACCGTTTTTGTGTT