NAU2331, NAU2331 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2331
Genbank IDDT049836
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049836.1
Source TypeEST
Repeat MotifTCT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2331_F: CCCAGCTTCAAAATCCTTTA
Primer 2NAU2331_R: GAGCACCAGGGAAATAGAAA
Product Length100
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049836
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:81875952..81876051 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:18956690..18956789 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:81689754..81689853 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:17725769..17725868 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:44599380..44599479 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:37418031..37418130 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:101513439..101513538 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:46550325..46550424 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:37081700..37081799 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:25142252..25142351 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:17024748..17024847 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:72460098..72460197 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17704045..17704144 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:85610453..85610555 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:18145080..18145179 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:87119727..87119826 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17678251..17678350 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:85718033..85718132 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18301647..18301746 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:80921563..80921662 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:18255651..18255750 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:75619977..75620076 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2359supercontigscaffold2359:339508..339607 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2359supercontigscaffold2359:337279..337378 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11092supercontigscaffold11092:51162..51261 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:81841972..81842071 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:17558348..17558447 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:83646481..83646580 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:18035799..18035898 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:83146126..83146225 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:17914383..17914482 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:90015597..90015696 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:18246318..18246417 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:84834506..84834605 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:18086913..18087012 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:88716454..88716553 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:18393425..18393524 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:52364932..52365031 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:27794326..27794425 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:17545580..17545679 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:76703037..76703136 +Gossypium anomalum (B1) genome NSF_v1n/a
chr11chromosomechr11:15582098..15582197 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:13042684..13042783 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:18001327..18001426 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14394272..14394371 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11264184..11264283 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:14158823..14158922 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:82799664..82799763 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:22286688..22286787 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:114957535..114957634 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049836.1DT049836.1Gossypium hirsutumsequence_feature


Sequence
>NAU2331 ID=NAU2331; Name=NAU2331; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
CCCAGCTTCAAAATCCTTTATCTTATTCTCAATTAACAGTCTATTAAGCC
TGTCTTCTTCTTCTTGTTTCAGACGCAGCTTTTCTATTTCCCTGGTGCTC