NAU2323, NAU2323 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2323
Genbank IDDT049755
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049755.1
Source TypeEST
Repeat MotifAAT(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2323_F: GGAATTCGTCCCTAGGAAAT
Primer 2NAU2323_R: ATTTTGGCTTGCCTCTTAAA
Product Length215
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049755
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:18286691..18286909 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:83236930..83237143 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:17020920..17021135 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:82798375..82798591 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00018603_CRI-A2_v1.0.a1chromosometig00018603_CRI-A2_v1.0.a1:20757..20975 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:47299323..47299541 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:25952191..25952411 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:3999154..3999372 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:25573709..25573922 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2697_A10supercontigscaffold2697_A10:460492..460705 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17037869..17038087 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17024003..17024221 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:88335119..88335332 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17633203..17633420 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:86914493..86914706 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:17586977..17587195 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:82122164..82122377 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9493supercontigscaffold9493:118652..118868 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2359supercontigscaffold2359:1232373..1232588 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2359supercontigscaffold2359:1229694..1229912 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:16844292..16844507 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:82948418..82948634 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:17357328..17357543 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:84757948..84758164 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:17232061..17232279 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:84278794..84279007 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:17542280..17542498 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:91184293..91184506 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:17386401..17386616 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:85946022..85946238 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:17724762..17724980 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:89917665..89917878 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:53544135..53544351 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:26542740..26542959 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:16866475..16866694 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:17156018..17156235 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:14943952..14944170 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:12541296..12541514 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:17294189..17294410 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:13820271..13820488 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:10850977..10851191 +Gossypium gossypioides (D6) genome ISU_v1n/a
F10chromosomeF10:21017482..21017698 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049755.1DT049755.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch10_At.10N/A162nau2323View
2TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A51.1NAU2323-300View
3TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A63.56NAU2323-300View
4TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A64.6NAU2323-300View
Sequence
>NAU2323 ID=NAU2323; Name=NAU2323; organism=Gossypium hirsutum; type=genetic_marker; length=215bp
GGAATTCGTCCCTAGGAAATAGGAATCAAGAGAACCAACAACACTTTGCA
ATTTACTAGGAAAAACAATTATCTTTAAGGCGGTATAGGTATAAATAAAA
TATACACAAACCAGATAACTATATCTAAAAATAATTAAATAAAATGAACA
ACTCCAAAATTCCAAATAATAATAATAATAGAAACGTTCTCTTTTTTTAA
GAGGCAAGCCAAAAT