NAU2289, NAU2289 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2289
Genbank IDDT049056
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT049056.1
Source TypeEST
Repeat MotifGTGCGT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2289_F: TGGTTTCCTCCCAAAAATTA
Primer 2NAU2289_R: GAGAAGGGATTCAGTGATCG
Product Length152
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT049056
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:109941205..109941350 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:65516444..65516593 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:110240904..110241049 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:3732044..3732197 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5283797..5283946 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:64986021..64986170 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr1chromosomeAt_chr1:3792236..3792381 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:88856782..88856927 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:68739917..68740060 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:118864196..118864341 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:117228798..117228943 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:68224966..68225115 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:115080025..115080170 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:111751707..111751852 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:63298740..63298889 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At11chromosomeAt11:93213442..93213587 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17499supercontigscaffold17499:75019..75168 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16644supercontigscaffold16644:204016..204161 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:64979160..64979309 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:108799905..108800050 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:67801117..67801266 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:112069461..112069606 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:66936750..66936899 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:115996814..115996965 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:69369117..69369266 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:122179916..122180061 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:64907315..64907464 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:109715883..109716028 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:119411302..119411447 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:127093961..127094154 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:126025758..126025907 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:65693384..65693533 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:45723523..45723676 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:67074453..67074620 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:41713595..41713751 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:34953534..34953685 +Gossypium gossypioides (D6) genome ISU_v1n/a
F11chromosomeF11:95700506..95700663 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:188491..188646 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT049056.1DT049056.1Gossypium hirsutumsequence_feature


Sequence
>NAU2289 ID=NAU2289; Name=NAU2289; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
TGGTTTCCTCCCAAAAATTAAACCCACAACTCAAACAAGCATTAGGTTTC
GTGTATGCGTGCGTGTGCGTGTGCGTGTGCGTGTGTCTGACTAATCATCC
CAAGGGATCGCAGCGGTTCGTAACACACTCTCCGATCACTGAATCCCTTC
TC