NAU2270, NAU2270 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2270
Genbank IDDT048734
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048734.1
Source TypeEST
Repeat MotifTA(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2270_F: CAAAGGTCGGATAAACATGG
Primer 2NAU2270_R: TGAACTGTCCATCTGTTTGG
Product Length165
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048734
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:9924213..9924375 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:9487994..9488156 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:115050257..115050419 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:59434072..59434322 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:60081673..60081835 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:9249712..9249874 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:9486715..9486877 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:9569467..9569629 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:9114703..9114865 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:9946902..9947064 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2464supercontigscaffold2464:119756..119918 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:9748102..9748264 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:9642450..9642612 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:9511998..9512160 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:10089661..10089823 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:9804461..9804623 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:10013061..10013223 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:12357794..12357956 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048734.1DT048734.1Gossypium hirsutumsequence_feature


Sequence
>NAU2270 ID=NAU2270; Name=NAU2270; organism=Gossypium hirsutum; type=genetic_marker; length=165bp
CAAAGGTCGGATAAACATGGCATATATATCTATATATATATATCATATGT
CTTCCATTAACTTCTGTTTCTAGAACTACATAATCCTTATTATCATTGAT
CAGACGCGGGAGGAACCAAAAGCCCCTGTTGAAGATTACCAGCCACCAAA
CAGATGGACAGTTCA