NAU2261, NAU2261 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2261
Genbank IDDT048623
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048623.1
Source TypeEST
Repeat MotifCA(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2261_F: ACGGCATCTTTCACCATTA
Primer 2NAU2261_R: AACTGAGGCTGCTATTTGCT
Product Length168
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048623
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:4071787..4071939 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:3781113..3781265 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:59341015..59341167 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:4197430..4197582 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:147777977..147778129 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4155.1supercontigscaffold4155.1:4400..4552 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:3748017..3748169 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:4797010..4797162 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:3824161..3824313 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:3678886..3679038 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:3939482..3939634 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:3842327..3842479 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold24944supercontigscaffold24944:34244..34396 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14607supercontigscaffold14607:66791..66943 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:4946660..4946812 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:3759355..3759507 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:3749931..3750083 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:5212761..5212913 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:3833917..3834069 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:3860713..3860865 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:3809721..3809873 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:3987466..3987618 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:127771121..127771273 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:126851921..126852073 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:4182195..4182347 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:102829859..102830017 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:4626934..4627086 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:3406194..3406346 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:3974287..3974439 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:4740861..4741013 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E03chromosomeE03:5760226..5760378 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:3833949..3834101 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:200292071..200292223 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048623.1DT048623.1Gossypium hirsutumsequence_feature


Sequence
>NAU2261 ID=NAU2261; Name=NAU2261; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
ACGGCATCTTTCACCATTAAAGACCTTCAGATAAATTNAAACCCAAAAAA
AGGGGGGGATACCTACCTATAGATAATGCTATGGCATTTTTAATAGCATT
CAAGGCACACACACACAAGAACAATAGAAAGATAAGCAATGCAGACGCAG
CAAATAGCAGCCTCAGTT