NAU2237, NAU2237 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2237
Genbank IDDT048283
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048283.1
Source TypeEST
Repeat MotifCAC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2237_F: CGGATTCTTCTTTCTCCTCA
Primer 2NAU2237_R: CTGCTTTATCTGCGGTCAA
Product Length192
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048283
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:61943833..61944020 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:101236338..101236525 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:60401265..60401452 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:110505868..110506058 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:54304547..54304731 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:36028923..36029113 -Gossypioides kirkii genome ISU_v3n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:96786128..96786315 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:2279287..2279474 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:134395774..134395961 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold238.1supercontigscaffold238.1:1230527..1230714 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:59073044..59073231 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:97293664..97293851 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:60789607..60789794 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:114972624..114972811 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:62292259..62292446 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:115475393..115475580 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:62220870..62221057 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:113270792..113270979 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:58993567..58993754 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:110060774..110060961 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:60331159..60331346 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt01chromosomeDt01:60329687..60329874 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10705supercontigscaffold10705:20641..20831 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8213supercontigscaffold8213:55688..55875 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8213supercontigscaffold8213:54216..54403 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:60650271..60650458 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:112992371..112992561 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:61292418..61292605 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:112968000..112968190 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:61529091..61529278 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:111470497..111470684 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:63085923..63086110 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:118998795..118998982 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:61055244..61055431 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:109140450..109140640 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:62689071..62689258 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:116927291..116927478 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:120216262..120216449 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:2630344..2630531 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:50108302..50108486 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:58998561..58998748 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:45219120..45219307 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:40092730..40092917 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:59844166..59844353 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:43636499..43636686 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:42170554..42170741 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:113830343..113830530 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:96152734..96152921 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:3121588..3121775 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048283.1DT048283.1Gossypium hirsutumsequence_feature


Sequence
>NAU2237 ID=NAU2237; Name=NAU2237; organism=Gossypium hirsutum; type=genetic_marker; length=192bp
CGGATTCTTCTTTCTCCTCAACTTTCTCTTCTTTTTTAGCCTCGGCTGCA
GCTGGAGCAGCAGCGGCACCAGCACCAGGAGCAGCAGCTGCAACAGCAAC
ACCACCACCACCAGATGGAACGGAAGCAAGCTTTTCCCTCCCGGATGCAA
TAAGCTCTGTTATATCTTTGCCCTTGACCGCAGATAAAGCAG