NAU2234, NAU2234 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2234
Genbank IDDT048243
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT048243.1
Source TypeEST
Repeat MotifTGA(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2234_F: GTTGTTGGAAGATCCAGACC
Primer 2NAU2234_R: AGTGGGTTCCTTGTAGGTGA
Product Length237
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT048243
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:18649021..18649241 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:13359809..13360044 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:17760705..17760925 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:12201723..12201958 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:50232878..50233112 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:39472329..39472561 +Gossypioides kirkii genome ISU_v3n/a
D10_10chromosomeD10_10:52254783..52255018 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:21430732..21430967 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:10276969..10277204 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:17561447..17561667 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:12161194..12161429 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:18027095..18027315 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:17694266..17694486 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:12361996..12362231 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:17638703..17638923 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:12854130..12854365 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:18503350..18503570 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:12798670..12798905 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1931supercontigscaffold1931:807742..807977 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8896supercontigscaffold8896:151221..151456 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:18006601..18006821 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:12003488..12003723 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:17821199..17821419 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:12571438..12571673 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:17905301..17905521 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:12400155..12400390 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:18484878..18485098 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:12701070..12701305 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:18143603..18143823 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:12524767..12525002 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:18601785..18602005 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:12925650..12925885 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:60759647..60759867 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:19259305..19259525 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:11909197..11909432 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:85395217..85395455 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:12130229..12130464 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:11027579..11027814 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:9137833..9138068 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:12241580..12241815 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:10161981..10162216 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:7965348..7965583 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:10146284..10146519 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:95937087..95937322 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:13671295..13671527 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:139316611..139316848 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT048243.1DT048243.1Gossypium hirsutumsequence_feature


Sequence
>NAU2234 ID=NAU2234; Name=NAU2234; organism=Gossypium hirsutum; type=genetic_marker; length=237bp
GTTGTTGGAAGATCCAGACCACGATGATGAAAATGCCGGATTCCAGTAAC
CCAATTCTCCCCCTGCAACTGGAGCTGACTCCAAAATGGATGTTGATGAA
GAAGAAGCGACATTGCTTAGAATTACTGCTGAAGTATCAGAGTAATAACT
TGATGATGATGACGACGATGATGATTTGAGCCTTTGATACAGTTCTTGAA
TACCTGTGTTTTGAACTTCACCTACAAGGAACCCACT