NAU2214, NAU2214 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2214
Genbank IDDT047911
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047911.1
Source TypeEST
Repeat MotifATT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2214_F: TCAATACAAAGCAGTTGAAGTC
Primer 2NAU2214_R: CATCATGGGAAGTTCAAACA
Product Length230
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047911
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:106289698..106289929 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:101812310..101812538 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:47969340..47969557 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:110827609..110827837 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:23631108..23631315 -Gossypium australe (G2) genome CRI_v1.1n/a
A08chromosomeA08:87500735..87500966 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:105615061..105615292 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:108725736..108725967 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:108430962..108431193 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:104484904..104485135 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6539supercontigscaffold6539:173190..173418 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6539supercontigscaffold6539:169765..169993 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:102412458..102412686 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:103663884..103664112 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:102063090..102063318 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:111622039..111622267 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:102679635..102679863 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:110272270..110272501 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:113762654..113762882 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:114717293..114717521 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:48869610..48869827 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:86514537..86514765 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:27849671..27849896 +Gossypium gossypioides (D6) genome ISU_v1n/a
E08chromosomeE08:102423423..102423651 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:89388885..89389113 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:33490155..33490362 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047911.1DT047911.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch08_At.08N/A89nau2214View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch24_Dt.08N/A45.2nau2214View
3Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A31nau2214View
4TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch08_At.08N/A40.8nau2214View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A42.3nau2214View
6TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A67.7NAU2214-270View
7TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A59.95NAU2214-270View
8TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A72.8NAU2214-270View
Sequence
>NAU2214 ID=NAU2214; Name=NAU2214; organism=Gossypium hirsutum; type=genetic_marker; length=230bp
TCAATACAAAGCAGTTGAAGTCAAATTATTATTATTACATTCACTTATTC
CACACTATATCAGTTTGACTCCCCATACTCCATGCTTTGCGGGCAGTAAA
ATCACTTCCACTTCCTGAATTTGCCGCCTCCATGCTTTCCGTGCTTGAAT
TTCCCATGCTTCCCGTGCTTGAATTTCCCCCCATGATGCTTAAACTTCCC
ACCACCATGATGTTTGAACTTCCCATGATG