NAU2202, NAU2202 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2202
Genbank IDDT047725
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047725.1
Source TypeEST
Repeat MotifTGA(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2202_F: AAACCCTAAAACAACCCACA
Primer 2NAU2202_R: GTTCATGCGACTGTTGAAAG
Product Length176
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047725
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:95710280..95710452 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:91209561..91209733 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:99269871..99270043 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:19325957..19326129 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold828.1supercontigscaffold828.1:594124..594296 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:76524389..76524561 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:98098069..98098241 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:97553499..97553671 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:93962513..93962685 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7433supercontigscaffold7433:227054..227226 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:91920014..91920186 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:93061978..93062150 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:91412488..91412660 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:101192199..101192371 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:92154233..92154405 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:99311178..99311350 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:109023835..109024007 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:103448785..103448957 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr04chromosomechr04:32404752..32404924 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:29354565..29354737 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047725.1DT047725.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A88.58NAU2202View
2AD-genome wide Reference Map (2009)AD_ch12_At.12N/A231NAU2202View
3TM-1 x Hai-7124, BC1 (2007)AD_ch12_At.12N/A9.8NAU2202-175View
4TM-1 x Hai-7124, BC1 (2008)AD_ch12_At.12N/A78.03NAU2202-175View
5TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A76.3NAU2202-175View
Sequence
>NAU2202 ID=NAU2202; Name=NAU2202; organism=Gossypium hirsutum; type=genetic_marker; length=176bp
AAACCCTAAAACAACCCACATGATGATGGTGATGATGATGATGATGAAAA
TACTTTTCCTTATCAATCAAGCCCCGTATATTCCTGAATTCTTCCACATG
ACAGGGGATTGTGATGGTTCCCTTCTGGTCGAACCCGTACTCCTACCTNC
TGCCTACTTTCAACAGTCGCATGAAC