NAU2197, NAU2197 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2197
Genbank IDDT047661
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047661.1
Source TypeEST
Repeat MotifAT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2197_F: TCACAAAAAGCCAAAACTCA
Primer 2NAU2197_R: TTGATTTAACGTCCCTTTGA
Product Length198
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047661
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:81913900..81914098 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:80224802..80225000 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold804.1supercontigscaffold804.1:585579..585777 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1019_A04supercontigscaffold1019_A04:43658..43856 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:84276807..84277005 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:86935336..86935534 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:83847347..83847545 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:80241870..80242068 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold27493supercontigscaffold27493:7669..7867 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A04chromosomeGbar_A04:80695026..80695224 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:81119263..81119461 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:82704065..82704261 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:91275017..91275212 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:81236756..81236954 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:88347804..88348002 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047661.1DT047661.1Gossypium hirsutumsequence_feature


Sequence
>NAU2197 ID=NAU2197; Name=NAU2197; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
TCACAAAAAGCCAAAACTCATTATGCGAGTTTTTTAACTTTAATTCTAAT
AAACTAACTAACTATATTTTTACTACAACACATTACTTCCGATAATTATA
ATTATTATTTATAAAATTTTAAATATATATATATAAAGGATTTCCCAGGC
GAAGCTGGGAAAATATACTAGTTTTAATTCAAAGGGACGTTAAATCAA