NAU2181, NAU2181 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2181
Genbank IDDT047329
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047329.1
Source TypeEST
Repeat MotifTA(8)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2181_F: AGCAAGCTTCCACAGCTTAT
Primer 2NAU2181_R: GGGCTCGAAAATGTAGTTTG
Product Length230
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047329
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:100188072..100188303 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:98251096..98251327 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:6605401..6605609 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr5chromosomeAt_chr5:48872856..48873087 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:92929237..92929468 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:104868537..104868766 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:103829244..103829475 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:101945745..101945976 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:97194246..97194477 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17851supercontigscaffold17851:31507..31738 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10500supercontigscaffold10500:66771..66994 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:97419881..97420112 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:99843374..99843605 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017638.1chromosomeCM017638.1:106204145..106204374 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:100158080..100158311 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:105518887..105519118 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:8152717..8152955 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:56491921..56492129 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:8139991..8140216 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047329.1DT047329.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A42.2NAU2181-bView
2JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A104.4NAU2181-aView
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch03_At.03N/A79.2NAU2181View
Sequence
>NAU2181 ID=NAU2181; Name=NAU2181; organism=Gossypium hirsutum; type=genetic_marker; length=230bp
AGCAAGCTTCCACAGCTTATTATAGTATTAGTAATAATAATCAACAATAA
AGATGAAAGCAAGGCACACACACTATATATATATATATATTAATGACGAA
AGAAATTATGAAAAACAATAAAGAACAAAATAATATAACAAGCTGAGCTG
ATTCCCTTCTACTTTGTTTCTTCCATTTAACCAAACCCCTCAATAATTCA
GCACCAAAAACAAACTACATTTTCGAGCCC