NAU2180, NAU2180 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2180
Genbank IDDT047326
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047326.1
Source TypeEST
Repeat MotifTTC(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2180_F: GGTCTGGGTTAATGTTCTGG
Primer 2NAU2180_R: AAGAAGAAGAAGAAGAAGAC
Product Length209
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047326
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:50942441..50942647 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:48058996..48059202 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41385436..41385642 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:2493491..2493697 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold288.1supercontigscaffold288.1:85372..85578 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:48312445..48312651 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:50306534..50306740 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49616118..49616324 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:50054591..50054797 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:48148645..48148851 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:50836181..50836387 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold23519supercontigscaffold23519:90492..90698 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48937948..48938154 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:51313757..51313963 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:49055323..49055524 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:50573068..50573269 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49720613..49720819 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51895642..51895848 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:47610333..47610539 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:48393747..48393953 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:40247975..40248181 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:33809913..33810119 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:129446967..129447173 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047326.1DT047326.1Gossypium hirsutumsequence_feature


Sequence
>NAU2180 ID=NAU2180; Name=NAU2180; organism=Gossypium hirsutum; type=genetic_marker; length=209bp
GGTCTGGGTTAATGTTCTGGTTGTAAAGACCGAACCCAGTCATCCTCAGG
TTCTGGTTTGGGGATGCAACGAATGTAACTGGAAAGTTTGCTGGGACTAC
AAATATGTCTCCACGCGACAACCGGGACCTTATTTTCCTGTATGGTCCAC
TTCTCCTTTCCTCTTCTTGGTTCTGTGTTCTTCTTCTTCGTCTTCTTCTT
CTTCTTCTT