NAU2179, NAU2179 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2179
Genbank IDDT047324
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047324.1
Source TypeEST
Repeat MotifTA(10)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2179_F: TCTCTTTCTGGTTCCTTTGG
Primer 2NAU2179_R: TCTCGATGTCTCCCAAAAAT
Product Length212
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047324
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:5635356..5635569 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:5621446..5621659 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:5196192..5196397 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:60778920..60779133 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:118666365..118666571 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr7chromosomeDt_chr7:3642856..3643069 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:6629414..6629627 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:5655878..5656091 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:5350523..5350736 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:5924318..5924531 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:5380184..5380397 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:5658906..5659119 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:5504947..5505160 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:5802012..5802225 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:5982653..5982866 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3927supercontigscaffold3927:153405..153610 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:5282190..5282395 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:5304661..5304866 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:5234260..5234467 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:5931818..5932031 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:5442945..5443156 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:5917924..5918135 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:5296784..5296989 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:5548481..5548694 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:6023406..6023619 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:5902557..5902768 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:5663030..5663236 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:58261925..58262138 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:5352642..5352855 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:4287101..4287310 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:3994739..3994952 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:4518628..4518841 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:6444516..6444729 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047324.1DT047324.1Gossypium hirsutumsequence_feature


Sequence
>NAU2179 ID=NAU2179; Name=NAU2179; organism=Gossypium hirsutum; type=genetic_marker; length=212bp
TCTCTTTCTGGTTCCTTTGGATTTTAGGATTACAAAAATGATACAACTNA
AAAGAAATCTTAATTCCCATTATATCCGACCCAACACAGCATGAATAATT
AAGGAAAGCCACAGCAACAACCATAGAGTACCAGCGGGGTATATATATAT
ATATATATATTCTTCTGTCTATAATCACTCTGCATTATAATGATTTTTGG
GAGACATCGAGA