NAU2171, NAU2171 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2171
Genbank IDDT047195
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047195.1
Source TypeEST
Repeat MotifCT(6)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2171_F: AATCCAAAACATCAGCCATC
Primer 2NAU2171_R: TTCGGATCTGAATGATGCTA
Product Length230
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047195
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:31993337..31993567 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:33064908..33065140 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:42977679..42977912 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:103733568..103733794 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:45999265..45999523 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:29916521..29916751 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:31869891..31870120 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:30876816..30877046 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:31022964..31023194 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:30869657..30869887 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017615.1chromosomeCM017615.1:31048962..31049192 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:32335409..32335639 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:30546049..30546281 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:31870269..31870499 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:32773955..32774181 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:34043392..34043624 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr_10chromosomeChr_10:14963028..14963375 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11574437..11574668 +Gossypium gossypioides (D6) genome ISU_v1n/a
F06chromosomeF06:29185883..29186109 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:141296265..141296487 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047195.1DT047195.1Gossypium hirsutumsequence_feature


Sequence
>NAU2171 ID=NAU2171; Name=NAU2171; organism=Gossypium hirsutum; type=genetic_marker; length=230bp
AATCCAAAACATCAGCCATCAATAATCCGTGCAACAAATAAAATAACTAC
CTCTCTCTCTCTCATAAATTTATATATTTATATATATAATATAATCACTC
CCTAGATCCACTACCACAGCTACTAAAATTCCAAACCAAATTCAAAATCA
AATCAAAAAGAAAAAAATACATATATAAAGAAAAACAGAGCATCATCTGA
ACACCAGAGATAGCATCATTCAGATCCGAA