NAU2166, NAU2166 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2166
Genbank IDDT047072
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047072.1
Source TypeEST
Repeat MotifAATG(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2166_F: TTTGACAGAATGCACTACCC
Primer 2NAU2166_R: AGGTTTGAAATCGTCATGGT
Product Length215
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047072
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:17238540..17238754 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:16415668..16415886 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:111512332..111512550 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A10chromosomeA10:16261307..16261521 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:16658569..16658782 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:16378307..16378521 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:16269718..16269932 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:17133266..17133480 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3399supercontigscaffold3399:453688..453906 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:16686208..16686426 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:16483925..16484143 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:16575970..16576183 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:17133277..17133491 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:16792584..16792802 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:17231734..17231948 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:17416311..17416529 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:17830163..17830381 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:84211243..84211471 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:13111116..13111301 +Gossypium thurberi (D1-5) genome CRI_v1n/a
F10chromosomeF10:14974990..14975223 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047072.1DT047072.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch10_At.10N/A41nau2166View
2(86-1 x G. anomalum) x Su8289, BC2F1 (2015)ABD_Bh.10N/A63.1nau2166View
3TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A44.8NAU2166-440View
4TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A56.89NAU2166-440View
5TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A71.5NAU2166-440View
Sequence
>NAU2166 ID=NAU2166; Name=NAU2166; organism=Gossypium hirsutum; type=genetic_marker; length=215bp
TTTGACAGAATGCACTACCCTAATTAATGAATGAATGAATGAATAAACAC
CCCTAAAAAATGACTACTCTCCAAATTCGTCCTTTTTAACTTATGAAAAG
AAATTGATTCATACCATCAACTTGTAGATCTAGATTTCAAATCCCACCTG
TAATTCTTTTTCTTAATCTTCAAACTCCAGATGAATATCCAAGAAACCAT
GACGATTTCAAACCT