NAU2161, NAU2161 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2161
Genbank IDDT047002
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT047002.1
Source TypeEST
Repeat MotifTA(10)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2161_F: GGGAACAAATGGAGACAAAG
Primer 2NAU2161_R: ATGACCATTGGATTTTCTGG
Product Length182
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT047002
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:69785574..69785848 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:107686518..107686786 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:105027146..105027418 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:947399..947685 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134622960..134623242 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:880823..881095 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:57309..57611 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold190.1supercontigscaffold190.1:266907..267175 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:7340305..7340579 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:66370983..66371257 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:99227817..99228085 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:68847394..68847668 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:111979450..111979718 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:68853391..68853665 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:110583601..110583869 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:70183238..70183510 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:109085632..109085900 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:67299054..67299328 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:104359842..104360110 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold39465supercontigscaffold39465:27684..27956 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold39465supercontigscaffold39465:23098..23370 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:104237746..104238018 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:106573046..106573318 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:68944220..68944490 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:105918280..105918556 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:70595705..70595977 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:113077304..113077578 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:107047147..107047419 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:71265759..71266033 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:112674371..112674639 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:930425..930699 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:1083482..1083764 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:62128877..62129165 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:1115693..1115965 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:65169801..65170077 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_05chromosomeChr_05:42905002..42905272 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:66664207..66664503 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:43925546..43925818 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:45642345..45642604 -Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:109314432..109314708 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT047002.1DT047002.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch03_At.03N/A110.44NAU2161View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch03_At.03N/A73.31NAU2161View
3AD-genome wide Reference Map (2009)AD_ch03_At.03N/A191NAU2161View
4TM-1 x Hai-7124, BC1 (2007)AD_ch03_At.03N/A16.7NAU2161-155View
5TM-1 x Hai-7124, BC1 (2008)AD_ch03_At.03N/A0NAU2161-155View
6TM-1 x Hai-7124, BC1 (2012)AD_ch03_At.03N/A6NAU2161-155View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch14_Dt.02N/A9NAU2161View
Sequence
>NAU2161 ID=NAU2161; Name=NAU2161; organism=Gossypium hirsutum; type=genetic_marker; length=182bp
GGGAACAAATGGAGACAAAGCTATGTATATATATATATATATATATTCTC
TTCTTTAGTTGGTGGGGTTACTGCGGAAGGACCCCAAAGCCTTGATAGCA
GCAGCTCGAAGGATATACTGATGATATGCAGCTGCTGCAACAGCTCCAAC
AAATGGACCAACCCAGAAAATCCAATGGTCAT