NAU2138, NAU2138 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2138
Genbank IDDT046534
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDT046534.1
Source TypeEST
Repeat MotifGCA(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2138_F: CAGAAAGGGGCAGAATTAGA
Primer 2NAU2138_R: TTGCCGTCTTCTTTCTTCTT
Product Length218
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDT046534
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeChr13:33237390..33237989 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DT046534.1DT046534.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A93nau2138View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A49.8nau2138View
3TM-1 x Hai-7124, BC1 (2007)AD_ch18_Dt.13N/A64.5NAU2138-700View
4TM-1 x Hai-7124, BC1 (2008)AD_ch18_Dt.13N/A69.16NAU2138-700View
5TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A52.2NAU2138-700View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch13_At.13N/A34.8NAU2138View
Sequence
>NAU2138 ID=NAU2138; Name=NAU2138; organism=Gossypium hirsutum; type=genetic_marker; length=218bp
CAGAAAGGGGCAGAATTAGATTTTTGTTTCACATCACAGTTCACAACAGC
CTAAAACACAAATCAACAACAGGGTAAAAGGGCAAAAGAGATGAGTACTA
TAATTAAAAAGGTCTTGGCCCAGGTGGCCCAGGCGGCCCGCCGAACATTG
GCCCACAGCAGCTTTCAAATATGCAGCAGCAGCAGAGAACATAAAAACAA
GAAGAAAGAAGACGGCAA