NAU2118, NAU2118 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2118
Genbank IDDR044200
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044200.1
Source TypeEST
Repeat MotifCT(5); TCC(5)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2118_F: GGTGAAGGTAAAAACCGAAG
Primer 2NAU2118_R: GGAATTGAGAAGCGAAAGAG
Product Length239
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044200
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:5919575..5919812 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:5430645..5430875 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:6060972..6061209 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:4746501..4746735 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:118357130..118357368 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:7405972..7406204 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:6927586..6927823 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold8563supercontigscaffold8563:1330..1567 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold78597supercontigscaffold78597:38..275 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:5665913..5666150 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:6222111..6222348 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:5934281..5934518 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:6098047..6098284 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:6268282..6268519 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold51432supercontigscaffold51432:712..949 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4935supercontigscaffold4935:16380..16610 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:5516626..5516856 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:5846320..5846557 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:5567107..5567337 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:6063382..6063619 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:6235094..6235331 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:6229715..6229952 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:5549475..5549705 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:6103338..6103575 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:6337241..6337478 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:6206527..6206765 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:5972379..5972617 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:5967984..5968219 +Gossypium anomalum (B1) genome NSF_v1n/a
E11chromosomeE11:6771524..6771756 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:5228911..5229143 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044200.1DR044200.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch11_At.11N/A271nau2118View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch11_At.11N/A70.5nau2118View
3TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A130.7NAU2118-250View
4TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A131.75NAU2118-250View
5TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A34.7NAU2118-250View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A210.7NAU2118View
Sequence
>NAU2118 ID=NAU2118; Name=NAU2118; organism=Gossypium hirsutum; type=genetic_marker; length=239bp
GGTGAAGGTAAAAACCGAAGAAACAAAGGCTCTCTCTCTTTGTGAATCCA
ATCAAATCGAAGATGTTGAGAGTGGCAACGAGGCGGCTCACTTCTTATTC
GTCTGCGTGGAGGTCGCACCAGGCCACTCCGCTATCGCCTCTCGTCCTTT
CATCGACGGCGCCGATTCTTCTGATTGTCTCAGATCCAATTCCTCCTCCT
CCTCCTCTTCCTTTTCCTTCTCTTTCGCTTCTCAATTCC