NAU2117, NAU2117 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2117
Genbank IDDR044199
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044199.1
Source TypeEST
Repeat MotifTC(9)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2117_F: GGAGAGGAGAGAGGAAAAA
Primer 2NAU2117_R: CTCCAAACTCTGCGAATTG
Product Length215
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044199
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:21028423..21028727 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:20194199..20194503 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_03chromosomeKI_03:8935598..8935901 -Gossypioides kirkii genome ISU_v3n/a
At_chr3chromosomeAt_chr3:34030685..34030989 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold18145supercontigscaffold18145:230..534 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:20664808..20665112 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:21486925..21487229 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:20070030..20070334 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:20899551..20899855 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:20647658..20647962 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:23284512..23284816 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9480supercontigscaffold9480:162150..162454 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:20266995..20267299 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:20196657..20196961 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:20680496..20680800 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:21347464..21347766 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:20617616..20617920 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:21056696..21057000 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:109881616..109881918 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_03chromosomeB_03:85267102..85267397 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044199.1DR044199.1Gossypium hirsutumsequence_feature


Sequence
>NAU2117 ID=NAU2117; Name=NAU2117; organism=Gossypium hirsutum; type=genetic_marker; length=215bp
GGAGAGGAGAGAGGAAAAAAAGTGANAAAGGAATAAAGACAGAGAACGAA
AGANAAGGTGAGTTGAAATCAAATCTCTTATTCTTTAAATTNCTGGGAGG
AATTGTATCTCTCTCTCTCTCTCTCCTCTCANCCGGACGAAATAGAGGAA
ATTTCCGTTGGTATAAAAATGCAGGTGTTTGATAGAATGACTATTCCAAT
TCGCAGAGTTTGGAG