NAU2113, NAU2113 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU2113
Genbank ID	DR044196
Type	SSR
Species	Gossypium hirsutum
Germplasm	7235 7235
Source Sequence	DR044196.1
Source Type	EST
Repeat Motif	CTT(5)
PCR Condition	Annealing temperature: 57
Primer 1	NAU2113_F: AAGACCTCCCTTTGACACAA
Primer 2	NAU2113_R: GGTTAGAAGGGCTCTGAACA
Product Length	229
Publication	[view all]
Contact	Zhang, Tian-Zhen
Comment	Primer data obtained in 2007-05

Contact

Name

Details

Zhang, Tian-Zhen

First name:	Tian-Zhen
Last name:	Zhang
Title:	Professor
Institution:	Zhejiang University
Address:	College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:	China
Email:	cotton@zju.edu.cn
Phone:	+86 571 88982971
Fax:	+86 571 88982971
Keywords:	cotton genetics and genomics, and breeding
Last update:	18-Mar-2022

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DR044196

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A01	chromosome	A01:92831409..92831649 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018202.1	chromosome	CM018202.1:102098275..102098515 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr13	chromosome	Dt_chr13:1998124..1998364 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A01	chromosome	A01:88992616..88992856 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A01	chromosome	Ghir_A01:106499853..106500093 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A01	chromosome	A01:107183746..107183986 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A01	chromosome	A01:104746508..104746748 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A01	chromosome	A01:101617934..101618174 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A01	chromosome	Gbar_A01:104598013..104598253 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A01	chromosome	A01:104655937..104656177 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
A01	chromosome	A01:108198586..108198826 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2006	Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and applied genetics. 2006; 112(3):430-439

Germplasm


Stock Name	Type
7235	accession
7235	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
DR044196.1	DR044196.1	Gossypium hirsutum	sequence_feature

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	CCRI 12-4 x (AD)5-7, F2 (2015)	AD_ch01_At.01	N/A	74	NAU2113	View

Sequence

>NAU2113 ID=NAU2113; Name=NAU2113; organism=Gossypium hirsutum; type=genetic_marker; length=229bp
AAGACCTCCCTTTGACACAATAAACAACGCACCTTCCCCTTCTTCTTCTT
CTTCATCTTCTAACATTCCTTGTCTGTCACTTGAAAAAAACCATAGCTTG
TGTGNNGNNNAAATCTAAGAACAAAAAAATGCATGCAAAAACGGATTCAG
AAGGGACGAGTATCGATGCGTCATGGCCGCCAAGGGTCGCCTCGAAGGCC
TGTATACTATGTTCAGAGCCCTTCTAACC

Search form

NAU2113, NAU2113 (genetic_marker) Gossypium hirsutum