NAU2110, NAU2110 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2110
Genbank IDDR044194
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044194.1
Source TypeEST
Repeat MotifAG(9)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2110_F: GAAAGAACATTTGGGTGAGG
Primer 2NAU2110_R: CCACACCATCAAATTGACC
Product Length219
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044194
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:35954056..35954372 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:33693154..33693470 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:87952713..87953029 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr7chromosomeDt_chr7:31894542..31894858 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:34197833..34198149 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:34624357..34624673 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:33848890..33849206 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:35037093..35037409 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:37907244..37907560 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7386supercontigscaffold7386:47278..47594 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:33529108..33529424 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:33596151..33596467 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:34379562..34379877 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
A11chromosomeA11:35310046..35310362 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:35096322..35096637 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044194.1DR044194.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A145.18NAU2110View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch21_Dt.11N/A69.89NAU2110View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A87.53NAU2110View
4AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A72NAU2110View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A31.8NAU2110View
6TM-1 x Hai-7124, BC1 (2007)AD_ch21_Dt.11N/A87NAU2110-500View
7TM-1 x Hai-7124, BC1 (2008)AD_ch21_Dt.11N/A79.06NAU2110-500View
8TM-1 x Hai-7124, BC1 (2012)AD_ch21_Dt.11N/A101.1NAU2110-500View
Sequence
>NAU2110 ID=NAU2110; Name=NAU2110; organism=Gossypium hirsutum; type=genetic_marker; length=219bp
GAAAGAACATTTGGGTGAGGGTTTAGAGAGAGAAAGAGAAGGCCGGAATC
TGAAAGACAAGACACAGAGAAAAAGAGAGAGAGAGAGAGAGATGTCGGGA
GGAATAGCGCGTGGTCGACTACGCCGAGGAACGTAAGGCATGGAGGAAGA
ACCATCCCCATGGTTTTGTTTGCGAAACCAGAGACGTTGCCTGATGGAAC
GGTCAATTTGATGGTGTGG