NAU2104, NAU2104 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2104
Genbank IDDR044189
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044189.1
Source TypeEST
Repeat MotifAT(5); AGT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2104_F: CAAGCATCACCGTTGATTAG
Primer 2NAU2104_R: CCGGGATCTTGAATGACATA
Product Length224
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044189
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:89107592..89107817 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:76704127..76704352 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:84620571..84620796 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:13174099..13174324 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:75728591..75728816 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:81970079..81970304 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:85105946..85106171 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:83631975..83632200 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:81120483..81120708 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2502supercontigscaffold2502:350401..350626 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:73435964..73436189 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:78549195..78549420 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:81607510..81607735 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:84372247..84372472 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:79875820..79876045 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:85480159..85480384 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:84675895..84676120 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:86608653..86608878 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044189.1DR044189.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A147nau2104View
2TM-1 x Hai-7124, BC1 (2007)AD_ch25_Dt.06N/A91.8NAU2104-220View
3TM-1 x Hai-7124, BC1 (2008)AD_ch25_Dt.06N/A50.35NAU2104-220View
4TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A59.8NAU2104-220View
Sequence
>NAU2104 ID=NAU2104; Name=NAU2104; organism=Gossypium hirsutum; type=genetic_marker; length=224bp
CAAGCATCACCGTTGATTAGGCGGTGGCTGACGGCGGCGGATGGTAGCAA
AACACTAGCAGAAGGTTGCAGCTACTGAAGGAGCAGGATTTGCATGTAAA
TATATATATCGTCCTTTTTAAAAGTTCTTCGATGGGTCAATTAAGTAGTA
GTAGTAAGTAAGATGTTTAAAAGAGTAAGCGGGAGGCAGGGTGGTCGATG
ANCTTATGTCATTCAAGATCCCGG