NAU2082, NAU2082 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2082
Genbank IDDR044171
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044171.1
Source TypeEST
Repeat MotifTCT(9)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2082_F: GGCTTTCATGTTCTCCAACT
Primer 2NAU2082_R: CAAAGCTTTCTCCACCAACT
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044171
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:58947090..58947285 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:102603505..102603700 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:56264141..56264336 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:100203893..100204079 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:8655537..8655726 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:6209201..6209384 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:12475437..12475629 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:9043395..9043587 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:130309726..130309915 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:1287666..1287861 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:47820238..47820433 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:55981841..55982036 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:91904920..91905115 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:58727647..58727839 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:105629642..105629837 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:58528056..58528251 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:106428139..106428334 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:57285781..57285976 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:105756178..105756373 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:55108211..55108406 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:100881599..100881794 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:58898186..58898381 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11812supercontigscaffold11812:289579..289774 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3380supercontigscaffold3380:284038..284224 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:56242611..56242806 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:100534292..100534478 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:57168617..57168812 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:102099658..102099844 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:56263452..56263641 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:101631234..101631429 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:58384358..58384553 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:108875382..108875580 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:57651816..57652011 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:103612632..103612830 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:58827375..58827570 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:108843400..108843595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:117383453..117383645 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:111842995..111843187 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:53661986..53662181 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:12128117..12128309 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:55564681..55564876 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:45780383..45780575 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:36778061..36778253 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:56758608..56758800 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:40469935..40470130 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:30742391..30742586 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11_5142389chromosomeChr11_5142389:220..418 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:13263379..13263568 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:84761401..84761584 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:12066687..12066870 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044171.1DR044171.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A54.31NAU2082View
2AD-genome wide Reference Map (2009)AD_ch10_At.10N/A195NAU2082View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A53.2NAU2082View
4TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A65.7NAU2082-170View
5TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A77.51NAU2082-170View
6TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A50.9NAU2082-170View
Sequence
>NAU2082 ID=NAU2082; Name=NAU2082; organism=Gossypium hirsutum; type=genetic_marker; length=196bp
GGCTTTCATGTTCTCCAACTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
AAATCTCATGTTCTAGATTCTCATTGGCATTGCAAGAGAACTCATCAGCC
ACGGTCCGCTCGGGTCAGATCAATTCCAACTCAGTCCTGGTGGCTTTGTT
AGACTCGCATTACACTGAGCTTGCCGAGTTGGTGGAGAAAGCTTTG