NAU2053, NAU2053 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2053
AliasNAU2053=NAU2081
NAU2081
Genbank IDDR044166
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044166.1
Source TypeEST
Repeat MotifTC(8)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2053_F: GCAGCTTCATTTGCCTACTA
Primer 2NAU2053_R: TACCGAAACTAACCCATGCT
Product Length169
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044166
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:45683683..45683851 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:42490989..42491157 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:49223940..49224111 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:24971298..24971462 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:45232023..45232180 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:1607600..1607768 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:41034357..41034525 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:46290738..46290906 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:48356452..48356620 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:47722687..47722855 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:44707336..44707504 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3707supercontigscaffold3707:321065..321233 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:43255865..43256033 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:44381479..44381647 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:43762671..43762844 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:46392042..46392210 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:44214135..44214303 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:48804646..48804814 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:47044513..47044679 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:50242366..50242537 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:37024090..37024257 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:24437503..24437665 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:16750544..16750706 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Unplaced_5116899chromosomeUnplaced_5116899:434..598 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:25699046..25699208 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F09chromosomeF09:38229111..38229296 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044166.1DR044166.1Gossypium hirsutumsequence_feature


Sequence
>NAU2053 ID=NAU2053; Name=NAU2053; organism=Gossypium hirsutum; type=genetic_marker; length=169bp
GCAGCTTCATTTGCCTACTATCTGTCTCTCTCTCTCTCTCTTTCACTTCG
CTTCCACAGCCTTCTCTTCTCCACCAATCCAAAAAAAACAAAGATGCAGT
ACAAAAACCTGGGCAGATCAGGCTTAAAGGTGAGTCAACTATCGTATGGA
GCATGGGTTAGTTTCGGTA