NAU2041, NAU2041 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2041
Genbank IDDR044741
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044741.1
Source TypeEST
Repeat MotifTC(7)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2041_F: GACTGAAAGCAAGAAGCTG
Primer 2NAU2041_R: TGGTATTCACTGGTCCAACA
Product Length211
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044741
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:69742136..69742910 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:110798506..110799283 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:65969148..65969920 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:111465311..111466087 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:3066803..3067580 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:52977156..52977943 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:4368923..4369702 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:139987525..139988299 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4438.1supercontigscaffold4438.1:58096..58869 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:4876860..4877637 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:62658759..62659533 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:89766330..89767107 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:69643571..69644345 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:119691588..119692365 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:67923697..67924471 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:117992671..117993448 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:68973292..68974065 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:115888801..115889578 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:65525943..65526716 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:112559011..112559788 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5044supercontigscaffold5044:14057..14833 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4137supercontigscaffold4137:287025..287797 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:65746619..65747391 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:109790446..109791222 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:68654694..68655466 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:112965989..112966769 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:67660007..67660774 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:116866232..116867010 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:70161114..70161886 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:122943178..122943957 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:65604899..65605671 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:111621170..111621947 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:69233846..69234620 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:120608602..120609379 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:128202229..128203009 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:126939401..126940179 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:2908693..2909470 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:66513033..66513810 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:68084062..68084837 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:35423373..35424151 -Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:111761556..111762338 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:96335728..96336501 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:1025472..1026250 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044741.1DR044741.1Gossypium hirsutumsequence_feature


Sequence
>NAU2041 ID=NAU2041; Name=NAU2041; organism=Gossypium hirsutum; type=genetic_marker; length=211bp
GACTGAAAGCAAGAAGCTGCTGTTCTCTCTCTCTCTCTTTCCCATAGTTT
CACCCATCTTTTAATCCATCGCTCACAAAATTATGGGTTTGAAGGAGGAA
TTCGAGGAGCATGCCGAGAAAGTTAAGACCCTCCCGGCCGCCCTTCGAAT
GATGACATGCTCATTCTCTATGGACTGTACAAGCAAGCTACTGTTGGACC
AGTGAATACCA