NAU2034, NAU2034 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU2034
Genbank IDDR044153
TypeSSR
SpeciesGossypium hirsutum
Germplasm7235
7235
Source SequenceDR044153.1
Source TypeEST
Repeat MotifAAAT(4)
PCR ConditionAnnealing temperature: 57
Primer 1NAU2034_F: GCTTTCCTCTCTCACTTTACG
Primer 2NAU2034_R: TCCACTCACTCGCTTTGTAG
Product Length204
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR044153
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:2865717..2865920 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:2907671..2907874 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2998354..2998557 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:139769924..139770127 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold72.1supercontigscaffold72.1:1606673..1606876 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:2446686..2446889 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:2444988..2445191 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:3248480..3248683 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:3005931..3006134 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:3240773..3240976 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:2846585..2846788 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold22007supercontigscaffold22007:99061..99264 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:3168263..3168466 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:2979216..2979419 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017643.1chromosomeCM017643.1:3178077..3178280 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:2978193..2978396 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:3293032..3293235 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:3396943..3397146 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:3336723..3336926 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:3584518..3584721 +Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:4561461..4561664 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
7235accession
7235accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR044153.1DR044153.1Gossypium hirsutumsequence_feature


Sequence
>NAU2034 ID=NAU2034; Name=NAU2034; organism=Gossypium hirsutum; type=genetic_marker; length=204bp
GCTTTCCTCTCTCACTTTACGTATTCTCTCTTTAAAAGGAAAAATAAATA
AATAAATAAAAGAAAATCCAGATTTTAACATCACAGATTTTTGTCTCAAA
AGAAAAATCGACAGATGGAGTTGCCGGTGATAGATCTAGCGCCGTATTTG
GCGATTGCCGATGCCGGCAATCGTGAAGGTGAGTCTACAAAGCGAGTGAG
TGGA