NAU1003, NAU1003 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU1003
AliasNAU1003=NAU0755
NAU0755
Genbank IDBQ406231
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AAG)6
PCR ConditionAnnealing temperature: 57
Primer 1NAU1003_F: ATACTCCCCGAGAGGAAAAC
Primer 2NAU1003_R: TTCATCGACATTGCTTCTTC
Product Length185
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ406231
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:77192786..77192970 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:73566351..73566535 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:78548728..78548918 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:1929189..1929373 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:70119393..70119577 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:79455937..79456121 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:81767377..81767561 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:80408569..80408753 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:79425580..79425764 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2418supercontigscaffold2418:107033..107217 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:74394386..74394570 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:77338381..77338565 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:77170394..77170575 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:81396157..81396341 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:76063112..76063296 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:81718886..81719070 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:20390271..20390455 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:20650806..20650996 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch05_At.05N/A220nau1003View
2TM-1 x Hai-7124, BC1 (2007)AD_ch05_At.05N/A151.2NAU1003-180View
3TM-1 x Hai-7124, BC1 (2008)AD_ch05_At.05N/A139.36NAU1003-180View
4TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A65.1NAU1003-180View
Sequence
>NAU1003 ID=NAU1003; Name=NAU1003; organism=Gossypium arboreum; type=genetic_marker; length=185bp
ATACTCCCCGAGAGGAAAACATAGTGGCAGATAGTCTTGCCAAAATGATT
TGTGATAAAAAGTCAGGTTTAAGATTATTTGAATATCCTTATTTGAGAGT
CTAGTTTTCGTTGAATTTGTATCTTATTTTTTTCAAAAAAGAAAAAAGAA
GAAGAAGAAGAAGACGAAGAAGCAATGTCGATGAA