NAU0758, NAU0758 (genetic_marker) Gossypium arboreum

Marker Overview
NameNAU0758
AliasNAU758
NAU0758=NAU1394=NAU1399
NAU1394
NAU1399
Genbank IDBQ414511
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8400
AKA 8400
Source TypeEST
Repeat Motif(AT)15
PCR ConditionAnnealing temperature: 57
Primer 1NAU758_F: CATTTCGGAACAAGAAAACC
Primer 2NAU758_R: GAGCTCATTGCAGACATTTG
Product Length154
Restriction EnzymeEcoRI; XhoI
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ414511
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:102426309..102426448 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:98734881..98735018 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:565076..565213 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:560632..560763 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:54120098..54120237 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold506.1supercontigscaffold506.1:839159..839298 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:86935950..86936089 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:107063882..107064021 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:106999146..106999285 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:105212571..105212710 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:102143385..102143524 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At12chromosomeAt12:92752574..92752711 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8759supercontigscaffold8759:29644..29781 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:101547809..101547946 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:101062844..101062981 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:102303122..102303259 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:106152689..106152828 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:101414670..101414807 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:108820161..108820300 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:109761881..109762012 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:116673987..116674118 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:57172263..57172400 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:83460140..83460277 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_08chromosomeChr_08:42775985..42776120 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:59247117..59247254 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08_94791chromosomeChr08_94791:5076..5213 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:40654958..40655324 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:90754812..90754947 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:173869542..173869675 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
AKA 8400accession
AKA 8400accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A0NAU758-aView
2JLZM x ZJXSLS, F2 (2008)A_JZ_A02N/A18NAU758-dView
Sequence
>NAU0758 ID=NAU0758; Name=NAU0758; organism=Gossypium arboreum; type=genetic_marker; length=154bp
CATTTCGGAACAAGAAAACCAAAAACATATGACCACCATATATATATATA
TATATATATATATATATGTATGTATATAACTCGACCTAAAATTTGACATC
AAAATAATCGAATTCATTTGATTATCAACAAAAACAAATGTCTGCAATGA
GCTC