MUSS0355, MUSS0355 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0355
AliasMUSS355
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifAT(5)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS355_F: GTCATTTGAACCGATTTGCC
Primer 2MUSS355_R: GCGGTCAAAAAGAAACTTGC
Product Length232
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:617324..617562 +
A05chromosomeA05:647708..647939 +
CM018219.1chromosomeCM018219.1:530835..531075 +
CM018206.1chromosomeCM018206.1:651397..651628 +
D5_05chromosomeD5_05:500943..501177 +
KI_05chromosomeKI_05:400334..400581 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:584461..584692 +
D10_05chromosomeD10_05:59974757..59974994 -
CM016626.1chromosomeCM016626.1:873442..873678 +
scaffold4198.1supercontigscaffold4198.1:68171..68402 +
Dt_chr9chromosomeDt_chr9:70271892..70272130 -
scaffold4083_D05supercontigscaffold4083_D05:62687..62925 -
scaffold1247_A05supercontigscaffold1247_A05:78933..79164 -
Ghir_D05chromosomeGhir_D05:679223..679461 +
Ghir_A05chromosomeGhir_A05:727908..728139 +
D05chromosomeD05:536173..536411 +
A05chromosomeA05:713068..713299 +
D05chromosomeD05:545285..545522 +
A05chromosomeA05:709472..709703 +
D05chromosomeD05:545429..545667 +
A05chromosomeA05:870989..871220 +
scaffold2307supercontigscaffold2307:142357..142588 -
scaffold2307supercontigscaffold2307:141322..141562 -
scaffold16235supercontigscaffold16235:139214..139454 -
scaffold16235supercontigscaffold16235:136256..136496 -
Gbar_D05chromosomeGbar_D05:548679..548919 +
Gbar_A05chromosomeGbar_A05:590232..590463 +
D05chromosomeD05:536479..536719 +
A05chromosomeA05:658414..658645 +
CM017627.1chromosomeCM017627.1:589754..589992 +
CM017614.1chromosomeCM017614.1:714428..714659 +
CM017653.1chromosomeCM017653.1:554496..554736 +
CM017640.1chromosomeCM017640.1:710896..711127 +
CM017705.1chromosomeCM017705.1:548019..548257 +
CM017692.1chromosomeCM017692.1:699244..699475 +
D05chromosomeD05:543837..544075 +
A05chromosomeA05:733006..733237 +
Chr05chromosomeChr05:825422..825653 +
Chr05chromosomeChr05:459357..459588 +
Chr05chromosomeChr05:501128..501365 +
B_05chromosomeB_05:85373169..85373415 -
Chr09chromosomeChr09:570619..570858 +
chr09chromosomechr09:384246..384483 +
Chr_09chromosomeChr_09:443117..443360 +
Chr09chromosomeChr09:602710..602950 +
Chr09chromosomeChr09:437354..437586 +
Chr09chromosomeChr09:410623..410860 +
F05chromosomeF05:567064..567301 +
Chr13chromosomeChr13:198824679..198824918 -
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A04N/A39.4MUSS355View
Sequence
>MUSS0355 ID=MUSS0355; Name=MUSS0355; organism=Gossypium arboreum; type=genetic_marker; length=232bp
GTCATTTGAACCGATTTGCCGGTTCTTTCTTATAAAAGACAAATTCCAAT
ACCATTACTCTACCTTCTCTATTATATTACATTGTCTTCTATATTAAAAT
ATTACATCATATCATCCAAAATTATCCCGACACTAATATATATATAAAAG
AATCGCAACACTTCTTAACTTTGATACAAAATAAATTCAATTCCACCCAT
TTAACCCTTCTCGCAAGTTTCTTTTTGACCGC