MUSS0200, MUSS0200 (genetic_marker) Gossypium arboreum

Marker Overview
NameMUSS0200
AliasMUSS200
Genbank IDN/A
TypeSSR
SpeciesGossypium arboreum
GermplasmAKA 8401
Source TypeEST
Repeat MotifCTT(4)
PCR ConditionAnnealing temperature: 55
Primer 1MUSS200_F: AGGCTCGCCTACCTCTAAGC
Primer 2MUSS200_R: CAGACTTAGGAGACGACGGC
Product Length164
ContactUlloa, Mauricio
CommentPrimer data obtained in 2007-11
Contact
NameDetails
Ulloa, Mauricio
Description:Breeding, genetics, and Genomics
First name:Mauricio
Last name:Ulloa
Title:Research Geneticist
Institution:USDA-ARS, W.I.C.S., Res. Unit
Address:17053 N. Shafter Ave., Shafter, California 93263
Country:United States
Email:mauricio.ulloa@usda.gov
Phone:661-746-8009
Fax:746-746-1619
Keywords:Breeding and Genomics
Last update:27-Apr-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D03chromosomeD03:52822355..52822518 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
D03chromosomeD03:52964047..52964210 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018204.1chromosomeCM018204.1:229609..229772 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018217.1chromosomeCM018217.1:52825095..52825258 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_02chromosomeD5_02:46087319..46087482 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_2_4chromosomeKI_2_4:40989954..40990114 -Gossypioides kirkii genome ISU_v3
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:111964650..111964813 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_02chromosomeD10_02:50234335..50234498 -Gossypium turneri (D10) genome NSF_v1_a2
CM016615.1chromosomeCM016615.1:112629028..112629191 -Gossypium australe (G2) genome CRI_v1.1
scaffold3763.1supercontigscaffold3763.1:42145..42308 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold2162.1supercontigscaffold2162.1:253514..253677 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold497_A03supercontigscaffold497_A03:82843..83006 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D03chromosomeD03:46542143..46542306 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A03chromosomeGhir_A03:707972..708135 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_D03chromosomeGhir_D03:52386548..52386711 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A03chromosomeA03:242335..242498 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D03chromosomeD03:53603278..53603441 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A03chromosomeA03:300230..300393 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D03chromosomeD03:53398449..53398612 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A03chromosomeA03:297321..297484 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
D03chromosomeD03:52765162..52765325 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt03chromosomeDt03:48432099..48432262 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold28256supercontigscaffold28256:61610..61773 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold14639supercontigscaffold14639:133411..133574 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold14639supercontigscaffold14639:132144..132307 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold14639supercontigscaffold14639:128785..128948 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A03chromosomeGbar_A03:273378..273541 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_D03chromosomeGbar_D03:50744987..50745150 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A03chromosomeA03:259600..259763 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
D03chromosomeD03:53550389..53550552 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017612.1chromosomeCM017612.1:303172..303335 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017625.1chromosomeCM017625.1:51950864..51951027 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017638.1chromosomeCM017638.1:314453..314616 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017651.1chromosomeCM017651.1:56252906..56253069 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017690.1chromosomeCM017690.1:317632..317795 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017703.1chromosomeCM017703.1:53839162..53839325 -Gossypium darwinii (AD5) genome HGS_v1.1
A03chromosomeA03:310406..310569 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
D03chromosomeD03:54679507..54679670 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr02chromosomeChr02:304947..305110 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:118522073..118522236 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr02chromosomeChr02:48051880..48052043 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_04chromosomeB_04:289883..290046 +Gossypium anomalum (B1) genome NSF_v1
Chr03chromosomeChr03:49897889..49898052 -Gossypium thurberi (D1-5) genome CRI_v1
Chr_03chromosomeChr_03:30219292..30219455 -Gossypium harknessii (D2-2) genome ISU_v1
Chr03chromosomeChr03:51823105..51823265 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr03chromosomeChr03:29898167..29898330 -Gossypium aridum (D4) genome ISU_v1
Chr03chromosomeChr03:25491080..25491243 -Gossypium gossypioides (D6) genome ISU_v1
Chr03chromosomeChr03:32409473..32409636 -Gossypium lobatum (D7) genome ISU_v1
E02chromosomeE02:87889653..87889816 -Gossypium stocksii (E1) genome NSF_v1
F02chromosomeF02:75935491..75935654 -Gossypium longicalyx (F1) genome NSF_v1
Chr02chromosomeChr02:566200..566363 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
AKA 8401accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A03N/A61.1MUSS200View
Sequence
>MUSS0200 ID=MUSS0200; Name=MUSS0200; organism=Gossypium arboreum; type=genetic_marker; length=164bp
AGGCTCGCCTACCTCTAAGCTCCATATCCATGGAGGAGAAGAGATTACCG
GAGCAATCGTCGACGACGATGACCACCGCAAAGACAGTAAGTCTCGCCGA
TTGACGTTTTCGGCTTCTTCTTCTTCGTCGTCGCCGTTGTTGTTGCCGTC
GTCTCCTAAGTCTG