MGHES0064, MGHES0064 (genetic_marker) Gossypium hirsutum

Marker Overview
NameMGHES0064
AliasMGHES64
MGHES-64
MGHES-064
Genbank IDL04497
TypeSSR
SpeciesGossypium hirsutum
GermplasmAcala SJ-2
Source SequenceL04497.1
Source TypeEST
Repeat Motif(TGATT)4
PCR ConditionAnnealing temperature: 55
Primer 1MGHES64_F: CCGTTATTCTTTCTCTATTCTACCTG
Primer 2MGHES64_R: ACATCTAAGCAGCCCAGCAG
Product Length197
Publication[view all]
CommentGHMYB1; Primer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankL04497
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:42748091..42748371 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:79267617..79267902 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:39245493..39245773 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:83783924..83784209 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:38489425..38489705 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:96788641..96788925 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:40562368..40562648 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:122821157..122821442 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:10598037..10598322 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:45571975..45572255 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:38644060..38644340 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:56122494..56122779 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:42083491..42083771 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:83390761..83391046 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:43413745..43414025 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:86349809..86350094 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:42221532..42221812 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:84313419..84313704 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:39147778..39148058 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:83007184..83007469 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:60301291..60301576 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5890supercontigscaffold5890:219286..219571 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2842supercontigscaffold2842:899695..899975 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:39011836..39012116 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:85002373..85002658 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:40439091..40439371 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:88124953..88125238 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:85501212..85501497 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:43156565..43156845 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:90135375..90135660 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:40320296..40320576 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:86136751..86137036 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:43196931..43197211 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:86547873..86548158 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:90992970..90993255 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:94988017..94988302 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:38542284..38542564 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:28543150..28543431 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:39355524..39355809 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:28551276..28551556 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:27077334..27077706 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:41757112..41757392 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:26987450..26987730 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:20714863..20715156 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:26424681..26424966 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:83861479..83861759 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:71530775..71531055 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:46034121..46034406 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Publications
YearPublication
2004EST-SSR: A new class of genetic markers in cotton.
Germplasm
Stock NameType
Acala SJ-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
L04497.1L04497.1Gossypium hirsutumsequence_feature


Sequence
>MGHES0064 ID=MGHES0064; Name=MGHES0064; organism=Gossypium hirsutum; type=genetic_marker; length=200bp
CCGTTATTCTTTCTCTATTCTACCTGATTTGATTTGATTTGATTTTGTAA
CTGATGGGACGATCACCTTGTTGTGAAAAGGCTCATACCAACAAAGGTGC
CTGGACCAAAGAGGAAGATCAACGCCTCATCAACTACATCCGTGTCCATG
GTGAAGGCTGCTGGCGTTCCCTCCCCAAAGCTGCTGGGCTGCTTAGATGT