JESPR0294, JESPR0294 (genetic_marker) Gossypium hirsutum

Marker Overview
NameJESPR0294
AliasJESPR294
Genbank IDAF351532
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceAF351532.1
Source Typegenomic
Repeat Motif(AGA)10
Primer 1JESPR0294_F: CTCCTCATTTTGCACGTCCTCTTC
Primer 2JESPR0294_R: AGGGCTTCATTCTTCTTCG
Publication[view all]
CommentPrimer data obtained in 2002
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAF351532
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:32663040..32663487 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:31463070..31463510 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
A05chromosomeA05:29555480..29555928 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:70923409..70923802 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:31577383..31577831 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:31404015..31404463 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:32505779..32506227 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:31609702..31610150 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:27525724..27526164 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8195supercontigscaffold8195:128094..128534 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:30260931..30261371 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:31799006..31799446 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:31947470..31947912 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:32375576..32376023 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:31631094..31631543 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:32956396..32956841 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:33223762..33224252 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_03chromosomeB_03:101267364..101267761 +Gossypium anomalum (B1) genome NSF_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AF351532.1AF351532.1Gossypium hirsutumsequence_feature


Sequence
>JESPR0294 ID=JESPR0294; Name=JESPR0294; organism=Gossypium hirsutum; type=genetic_marker; length=450bp
CTCCTCATTTTGCACGTCCTCTTCCTGCAAGAACTTTGTTTTTTATTAGA
CTTATGTATAANAGTGAAAAATATTGAAAGGGATAAGATGAAGTACTGAA
AATTAAAGAAATGGCGAAGGGAAATGGTGGAGGAAGAAAAATGGTGATTA
ATGTTGTCGGTGAAGGGCCAAAAGGGTCTTCTCCAAAAGAAGCAGAGGCA
TTGAACCCTAAGCAAAATTCTCAAGGTGCACCTAAAAAAGCTTGGACTAA
ATTTGGTGTTGTTACTGCAAGTAAGCCACCAAAAGCCCCAGTTGCATAAC
CATGAAGGTTTTTCANAAGGTACTATCCTTTGGTGTTAATAATCATTTCA
ACCAACTTNGCAGCAGCTNAAGAAGAAAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAANACCCGANNNNGAANAAGAATTCGAAGAAGAATGAAGCCCT