JESPR0288, JESPR0288 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	JESPR0288
Alias	JESPR288
Genbank ID	AF351526
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Sequence	AF351526.1
Source Type	genomic
Repeat Motif	(TA)5(GT)11
Primer 1	JESPR0288_F: CATGTATATACAAGTATAAAG
Primer 2	JESPR0288_R: CAATATAAGCACGTAAC
Publication	[view all]
Comment	Primer data obtained in 2002

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	AF351526

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D10	chromosome	D10:47292455..47292561 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018215.1	chromosome	CM018215.1:27345312..27345418 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr2	chromosome	Dt_chr2:28427866..28427972 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
Dt_chr2	chromosome	Dt_chr2:1736376..1736482 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
scaffold5806	supercontig	scaffold5806:5267..5373 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D07	chromosome	D07:28017500..28017606 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D09	chromosome	D09:41437114..41437220 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D01	chromosome	D01:10787158..10787264 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
D10	chromosome	D10:44520209..44520315 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D01	chromosome	Gbar_D01:12218758..12218864 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D08	chromosome	D08:48949003..48949109 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
D01	chromosome	D01:27611803..27611909 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017656.1	chromosome	CM017656.1:50185766..50185872 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
D10	chromosome	D10:47257726..47257832 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2001	Reddy O, Pepper A, Abdurakhmonov I, Saha S, Jenkins J, Brooks T, Bolek Y, El-Zik K. New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Journal of cotton science. 2001; 5(2):103-113

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
AF351526.1	AF351526.1	Gossypium hirsutum	sequence_feature

Sequence

>JESPR0288 ID=JESPR0288; Name=JESPR0288; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
CATGTATATACAAGTATAAAGTATTGGTTTAATAAAAAGTATATATATAT
GTGTGTGTGTGTGTGTGTGTGTACTTNCANGCATTAATAAACATGTGTTA
CGTGCTTATATTG

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JESPR0288, JESPR0288 (genetic_marker) Gossypium hirsutum